Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Contact: https://github.com/aquaskyline/SOAPdenovo2/issues
Upstream-Name: SOAPdenovo2
Source: https://github.com/aquaskyline/SOAPdenovo2
Files-Excluded:
    standardPregraph/*.a
    standardPregraph/inc/sam.h
    standardPregraph/inc/bam.h
    standardPregraph/inc/bgzf.h
    sparsePregraph/inc/sam.h
    sparsePregraph/inc/bam.h
    sparsePregraph/inc/bgzf.h
    standardPregraph/inc/zlib.h
    standardPregraph/inc/zconf.h
    sparsePregraph/inc/zlib.h
    sparsePregraph/inc/zconf.h
    standardPregraph/inc/*.so
    sparsePregraph/*.a
    fusion/finalFusion

Files: *
Copyright: 2008-2017 BGI-Shenzhen
License: GPL-3+
 This package is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation; either version 3 of the License, or
 (at your option) any later version.
 .
 This package is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
 .
 You should have received a copy of the GNU General Public License
 along with this program. If not, see <http://www.gnu.org/licenses/>
 .
 On Debian systems, the complete text of the GNU General
 Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".

Files: standardPregraph/inc/faidx.h sparsePregraph/inc/faidx.h
Copyright: 2008 Broad Institute / Massachusetts Institute of Technology
License: MIT

License: MIT
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal
 in the Software without restriction, including without limitation the rights
 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
 copies of the Software, and to permit persons to whom the Software is
 furnished to do so, subject to the following conditions:
 .
 The above copyright notice and this permission notice shall be included in
 all copies or substantial portions of the Software.
 .
 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
 THE SOFTWARE.

Files: debian/*
Copyright: 2012-2013 Olivier Sallou <osallou@debian.org>
           2014-2017 Andreas Tille <tille@debian.org>
License: GPL-2+
 This package is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation; either version 2 of the License, or
 (at your option) any later version.
 .
 This package is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
 .
 You should have received a copy of the GNU General Public License
 along with this program. If not, see <http://www.gnu.org/licenses/>
 .
 On Debian systems, the complete text of the GNU General
 Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".

Files: debian/tests/test-data/SRR2480581.fastq.tar.gz
Copyright: 1996-2018 NCBI
License: unrestricted
 Databases of molecular data on the NCBI Web site include such examples as
 nucleotide sequences (GenBank), protein sequences, macromolecular structures,
 molecular variation, gene expression, and mapping data. They are designed to
 provide and encourage access within the scientific community to sources of
 current and comprehensive information. Therefore, NCBI itself places no
 restrictions on the use or distribution of the data contained therein. Nor do
 we accept data when the submitter has requested restrictions on reuse or
 redistribution.
Comment:
 The test data files contained in the archive are a small data set prepared
 from the original SRA with accession number SRR2480581.
 .
 To download the original file you can use fastq-dump tool from SRA Toolkit:
    fastq-dump --split-3 SRR2480581
