spades (3.13.1+dfsg-2ubuntu1) jammy; urgency=medium

  * d/patches:
    + Add python 3.10 support by getting rid of distutils.

 -- Alexandre Ghiti <alexandre.ghiti@canonical.com>  Mon, 21 Feb 2022 10:37:56 +0000

spades (3.13.1+dfsg-2build3) hirsute; urgency=medium

  * No-change rebuild to build with python3.9 as default.

 -- Matthias Klose <doko@ubuntu.com>  Thu, 19 Nov 2020 18:38:35 +0100

spades (3.13.1+dfsg-2build2) focal; urgency=medium

  * No-change rebuild for libgcc-s1 package name change.

 -- Matthias Klose <doko@ubuntu.com>  Mon, 23 Mar 2020 07:26:03 +0100

spades (3.13.1+dfsg-2build1) focal; urgency=medium

  * No-change rebuild to build with python3.8.

 -- Matthias Klose <doko@ubuntu.com>  Sat, 25 Jan 2020 04:39:55 +0000

spades (3.13.1+dfsg-2) unstable; urgency=medium

  * Depends: python3-distutils

 -- Andreas Tille <tille@debian.org>  Fri, 22 Nov 2019 10:48:44 +0100

spades (3.13.1+dfsg-1) unstable; urgency=medium

  * Fix watch file
  * Moved packaging to Python3
    Closes: #938521
  * New upstream version
  * debhelper-compat 12
  * Standards-Version: 4.4.1
  * Move source package lintian overrides to debian/source.
  * Set upstream metadata fields: Repository.
  * Make sure Python3 interpreter is used in scripts
  * Specify yaml loader
  * Drop webvis dir from source which has compressed JS but its not used
    in the binary package

 -- Andreas Tille <tille@debian.org>  Mon, 18 Nov 2019 15:34:43 +0100

spades (3.13.0+dfsg2-2) unstable; urgency=medium

  * Also remove jemalloc from (build-)depends.

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Thu, 17 Jan 2019 10:12:47 -0800

spades (3.13.0+dfsg2-1) unstable; urgency=medium

  * Restore the bundled jemalloc as Debian's package is too new.
  * Pull releases from GitHib.
  * Standards-Version: 4.3.0 (no changes needed)
  * Install README.md to /usr/share/doc/spades/

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Thu, 17 Jan 2019 07:54:34 -0800

spades (3.13.0+dfsg-1) unstable; urgency=medium

  * New upstream version
  * Upstream has removed dipspades

 -- Andreas Tille <tille@debian.org>  Tue, 16 Oct 2018 22:08:43 +0200

spades (3.12.0+dfsg-1) unstable; urgency=medium

  [ Andreas Tille ]
  * New upstream version
    Closes: #897867
  * Fix watch file
  * Add dh-python

  [ Alexandre Mestiashvili ]
  * Add tmp link for tests for spades-bwa
  * Update override_dh_auto_test: implement a workaround so dh_auto_test
    can access data files
  * Add bwa to d/tests/control
  * Remove *.pyc files
  * Add patch 0118_adjust_spades_home_again.patch
    replacing 0113_adjust_paths.patch
  * Update d/patches/spelling
  * Remove duplicated docs from /usr/share/spades
  * Bump Policy to 4.2.1, add myself to uploaders
  * Use https for copyright Format field, s/MIT/Expat/
  * Rename overridden tag to debian-watch-does-not-check-gpg-signature

 -- Alexandre Mestiashvili <mestia@debian.org>  Mon, 10 Sep 2018 19:37:49 +0000

spades (3.11.1+dfsg-2) unstable; urgency=medium

  * Build-Depends: libnlopt-cxx-dev
    Closes: #902592
  * d/rules:
     + filter nocheck,$(DEB_BUILD_OPTIONS)
     + do not parse d/changelog
  * debhelper 11
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.1.4

 -- Andreas Tille <tille@debian.org>  Fri, 06 Jul 2018 10:54:09 +0200

spades (3.11.1+dfsg-1) unstable; urgency=medium

  [ Sascha Steinbiss ]
  * New upstream release.
  * Bump Standards-Version.
  * Remove obsolete Testsuite: entry in d/control
  * Add d/copyright entry for new included BBHash headers.

  [ Steffen Moeller ]
  * debian/upstream/metadata:
    - added references to registries
    - yamllint cleanliness

 -- Sascha Steinbiss <satta@debian.org>  Mon, 18 Dec 2017 00:29:26 +0000

spades (3.10.1+dfsg-3) unstable; urgency=medium

  * Fix FTBFS with GCC 7.
    Closes: #853666
  * Update homepage.
  * Bump Standards-Version.

 -- Sascha Steinbiss <satta@debian.org>  Thu, 10 Aug 2017 16:39:50 +0200

spades (3.10.1+dfsg-2) unstable; urgency=medium

  * Upload to unstable.

 -- Sascha Steinbiss <satta@debian.org>  Sun, 18 Jun 2017 16:31:57 +0000

spades (3.10.1+dfsg-1) experimental; urgency=medium

  [ Michael R. Crusoe ]
  * New upstream version 3.10.1+dfsg

  [ Sascha Steinbiss ]
  * Build for experimental.

 -- Sascha Steinbiss <satta@debian.org>  Fri, 21 Apr 2017 17:54:15 +0000

spades (3.9.1+dfsg-1) unstable; urgency=medium

  * New upstream release.

 -- Sascha Steinbiss <satta@debian.org>  Wed, 07 Dec 2016 06:31:19 +0000

spades (3.9.0+dfsg-1) unstable; urgency=medium

  * New upstream release.
  * Add copyright entry for cxxopts.
  * Add rnaSPAdes manpage, wrappers, tests.

 -- Sascha Steinbiss <satta@debian.org>  Sun, 24 Jul 2016 13:12:31 +0000

spades (3.8.2+dfsg2-1) unstable; urgency=medium

  * Make sure bundled headers are not used by cleaning orig tarball.

 -- Sascha Steinbiss <satta@debian.org>  Tue, 19 Jul 2016 20:57:51 +0000

spades (3.8.2+dfsg-1) unstable; urgency=medium

  * New upstream release.
  * Adapt patches for new upstream code.
  * Remove unused override.
  * Build with debug symbols.

 -- Sascha Steinbiss <satta@debian.org>  Mon, 11 Jul 2016 08:39:53 +0000

spades (3.8.1+dfsg-2) unstable; urgency=medium

  * Stop using embedded libnlopt, libssw and libhat-trie.
  * Update email addresses.

 -- Sascha Steinbiss <satta@debian.org>  Sat, 02 Jul 2016 17:45:37 +0000

spades (3.8.1+dfsg-1) unstable; urgency=medium

  * New upstream release.

 -- Sascha Steinbiss <sascha@steinbiss.name>  Mon, 13 Jun 2016 09:02:52 +0000

spades (3.8.0+dfsg-1) unstable; urgency=medium

  * New upstream release.
  * Drop patches that are no longer necessary.
  * Update licenses.
  * Add metaspades and plasmidspades symlinks.
  * Add man page stubs for metaspades and plasmidspades.
  * Bump Standards-Version.

 -- Sascha Steinbiss <sascha@steinbiss.name>  Sun, 05 Jun 2016 09:56:42 +0000

spades (3.7.1+dfsg-3) unstable; urgency=medium

  * Force LANG and LANGUAGE to ensure reproducibility.
  * Enable compiler messages.

 -- Sascha Steinbiss <sascha@steinbiss.name>  Thu, 21 Apr 2016 14:44:14 +0000

spades (3.7.1+dfsg-2) unstable; urgency=medium

  [ Sascha Steinbiss ]
  * Use asciidoctor instead of ronn for reproducible man pages
  * enable full hardening
  * add override for pedantic Lintian msg
  * use correct YAML module
    Closes: #818584

  [ Afif Elghraoui ]
  * Replace patch with a sed command to fix python-yaml imports

 -- Sascha Steinbiss <sascha@steinbiss.name>  Fri, 18 Mar 2016 14:25:06 +0000

spades (3.7.1+dfsg-1) unstable; urgency=medium

  * New upstream release.
  * Add gbp.conf to always use pristine-tar.

 -- Sascha Steinbiss <sascha@steinbiss.name>  Sat, 12 Mar 2016 07:23:31 +0000

spades (3.7.0+dfsg-1) unstable; urgency=medium

  * Make changelog building reproducible.
  * New upstream release.
  * Update d/copyright.

 -- Sascha Steinbiss <sascha@steinbiss.name>  Wed, 24 Feb 2016 22:02:53 +0000

spades (3.6.2+dfsg-2) unstable; urgency=medium

  * Use Debian's jemalloc.
  * Fix spelling issues.
  * Bump Standards-Version.

 -- Sascha Steinbiss <sascha@steinbiss.name>  Mon, 22 Feb 2016 09:27:51 +0000

spades (3.6.2+dfsg-1) unstable; urgency=low

  * Initial release (Closes: #813988)

 -- Sascha Steinbiss <sascha@steinbiss.name>  Sun, 07 Feb 2016 10:21:39 +0000
