{
  "results":[
    {
      "command_line":"import -format plain -file /tmp/tmp.randomid/balls",
      "command_name":"import",
      "output":{
        "atoms_summary":{
          "number_total":2952,
          "volume":null},
        "object_names":["balls"]},
      "success":true},
    {
      "command_line":"construct-contacts",
      "command_name":"construct-contacts",
      "data_object":"balls",
      "output":{
        "contacts_summary":{
          "number_total":21361,
          "number_drawable":0,
          "area":81912.1}},
      "success":true},
    {
      "command_line":"describe-exposure -probe-min 4.0 -probe-max 30.0 -adj-atom-exposure-value buriedness -weight-power 3 -expansion 0.5 -smoothing-iterations 3 -smoothing-depth 1",
      "command_name":"describe-exposure",
      "data_object":"balls",
      "success":true},
    {
      "command_line":"spectrum-atoms -adjunct buriedness -only-summarize",
      "command_name":"spectrum-atoms",
      "data_object":"balls",
      "output":{
        "atoms_summary":{
          "number_total":2952,
          "volume":71979.5},
        "spectrum_summary":{
          "min_value":0.0108794,
          "max_value":0.8087,
          "number_of_values":970,
          "mean_of_values":0.178754,
          "sd_of_values":0.221093}},
      "success":true},
    {
      "command_line":"find-connected-components -atoms-core-use [-v buriedness=0.7:1.0] -atoms-all-use [-v buriedness=0.4:1.0] -adj-component-number pocket_id -contacts-use [-t peripherial]",
      "command_name":"find-connected-components",
      "data_object":"balls",
      "output":{
        "atoms_summary":{
          "number_total":174,
          "volume":6510.91},
        "components_summary":{
          "number_of_components":4,
          "component_sizes":[{"rank":1,"size":134},{"rank":2,"size":17},{"rank":3,"size":5},{"rank":4,"size":4}]}},
      "success":true},
    {
      "command_line":"select-atoms -use [-v pocket_id=1:999999] -name pocket_atoms_main",
      "command_name":"select-atoms",
      "data_object":"balls",
      "output":{
        "atoms_summary":{
          "number_total":160,
          "volume":5991.23},
        "selection_name":"pocket_atoms_main"},
      "success":true},
    {
      "command_line":"select-atoms-by-triangulation-query -use [pocket_atoms_main] -expansion 0.5 -min-radius 1.4 -max-edge 999999 -name pocket_atoms_all",
      "command_name":"select-atoms-by-triangulation-query",
      "data_object":"balls",
      "output":{
        "initial_atoms_summary":{
          "number_total":160,
          "volume":5991.23},
        "number_of_relevant_voronoi_vertices":1337,
        "total_relevant_tetrahedron_volume":21833.1,
        "selected_atoms_summary":{
          "number_total":539,
          "volume":16906.1},
        "selection_name":"pocket_atoms_all"},
      "success":true},
    {
      "command_line":"export-atoms -file /tmp/tmp.randomid/result_atoms",
      "command_name":"export-atoms",
      "data_object":"balls",
      "output":{
        "file":"/tmp/tmp.randomid/result_atoms",
        "atoms_summary":{
          "number_total":2952,
          "volume":71979.5}},
      "success":true},
    {
      "command_line":"set-adjunct-of-atoms -name pocketness -value 0",
      "command_name":"set-adjunct-of-atoms",
      "data_object":"balls",
      "output":{
        "atoms_summary":{
          "number_total":2952,
          "volume":71979.5}},
      "success":true},
    {
      "command_line":"set-adjunct-of-atoms -use [pocket_atoms_all] -name pocketness -value 1",
      "command_name":"set-adjunct-of-atoms",
      "data_object":"balls",
      "output":{
        "atoms_summary":{
          "number_total":539,
          "volume":16906.1}},
      "success":true},
    {
      "command_line":"export-atoms -as-pdb -pdb-b-factor pocketness -file /tmp/tmp.randomid/result_pocketness.pdb",
      "command_name":"export-atoms",
      "data_object":"balls",
      "output":{
        "file":"/tmp/tmp.randomid/result_pocketness.pdb",
        "atoms_summary":{
          "number_total":2952,
          "volume":71979.5}},
      "success":true},
    {
      "command_line":"export-triangulation [pocket_atoms_all] -strict -min-radius 1.4 -max-edge 999999 -file /tmp/tmp.randomid/result_vertices",
      "command_name":"export-triangulation",
      "data_object":"balls",
      "output":{
        "file":"/tmp/tmp.randomid/result_vertices",
        "full_triangulation_summary":{
          "number_input_balls":2952,
          "number_all_balls":2960,
          "number_quadruples":19761,
          "number_voronoi_vertices":19765},
        "atoms_summary":{
          "number_total":539,
          "volume":16906.1},
        "number_of_relevant_voronoi_vertices":1385,
        "total_relevant_tetrahedron_volume":22415.9},
      "success":true},
    {
      "command_line":"add-figure-of-triangulation [pocket_atoms_all] -strict -min-radius 1.4 -max-edge 999999 -figure-name pocket_tetrahedrons",
      "command_name":"add-figure-of-triangulation",
      "data_object":"balls",
      "success":true},
    {
      "command_line":"color-figures -name pocket_tetrahedrons -col 0x00FFFF",
      "command_name":"color-figures",
      "data_object":"balls",
      "success":true},
    {
      "command_line":"export-figures-as-pymol-cgo -figure-name pocket_tetrahedrons -cgo-name 'tetrahedrons1' -file /tmp/tmp.randomid/result_draw_tetrahedrons.py",
      "command_name":"export-figures-as-pymol-cgo",
      "data_object":"balls",
      "output":{
        "file":"/tmp/tmp.randomid/result_draw_tetrahedrons.py"},
      "success":true},
    {
      "command_line":"export-triangulation-voxels [pocket_atoms_all] -strict -min-radius 1.4 -max-edge 999999 -search-step-factor 1.0 -file /tmp/tmp.randomid/voxels_raw",
      "command_name":"export-triangulation-voxels",
      "data_object":"balls",
      "output":{
        "file":"/tmp/tmp.randomid/voxels_raw",
        "number_of_voxels":8059},
      "success":true},
    {
      "command_line":"print-triangulation [pocket_atoms_all] -strict -min-radius 1.4 -max-edge 999999 -only-summary",
      "command_name":"print-triangulation",
      "data_object":"balls",
      "output":{
        "full_triangulation_summary":{
          "number_input_balls":2952,
          "number_all_balls":2960,
          "number_quadruples":19761,
          "number_voronoi_vertices":19765},
        "atoms_summary":{
          "number_total":539,
          "volume":16906.1},
        "number_of_relevant_voronoi_vertices":1385,
        "total_relevant_tetrahedron_volume":22415.9},
      "success":true}],
  "results_summary":{
    "count_all":17,
    "count_successful":17,
    "full_success":true,
    "partial_success":true}}
