{
  "results":[
    {
      "command_line":"source './jobs_output/self_scripting/script_input'",
      "command_name":"source",
      "success":true},
    {
      "command_line":"set-alias printseq \"print-sequence -secondary-structure\"",
      "command_name":"set-alias",
      "output":{
        "alias":"printseq",
        "script":"print-sequence --secondary-structure"},
      "success":true},
    {
      "command_line":"import --file ./input/single/structure.cif",
      "command_name":"import",
      "output":{
        "atoms_summary":{
          "number_total":1771,
          "volume":null},
        "object_names":["structure.cif"]},
      "success":true},
    {
      "command_line":"import -file \"./input/single/structure.pdb\"",
      "command_name":"import",
      "output":{
        "atoms_summary":{
          "number_total":1717,
          "volume":null},
        "object_names":["structure.pdb"]},
      "success":true},
    {
      "command_line":"import ./input/single/structure.pdb --include-heteroatoms",
      "command_name":"import",
      "output":{
        "atoms_summary":{
          "number_total":1771,
          "volume":null},
        "object_names":["structure.pdb_2"]},
      "success":true},
    {
      "command_line":"print-sequence --secondary-structure",
      "command_name":"print-sequence",
      "data_object":"structure.pdb_2",
      "output":{
        "atoms_summary":{
          "number_total":1771,
          "volume":null},
        "chains":[
          {
            "chain_name":"A",
            "segment_lengths":[63,1,162],
            "residue_sequences":["SKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTF","X","VQCFSRYPDHXKRHDFFKSAXPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIXADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHXVLLEFVTAAGI"],
            "secondary_structure_sequences":["--HHHHH---SSSSSSSSSSS--SSSSSSSSSSSS----SSSSSSSS--------HHHH----","-","-----S------------------SSSSSSSSS----SSSSSSSSSSS--SSSSSSSSSSS------------S------SSSSSSSS----SSSSSSSSSSSS----SSSSSSSSSSSS-----------SSSSSSSSSS--------SSSSSSSSSSS--"],
            "total_length":226,
            "total_residue_sequence":"SKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFXVQCFSRYPDHXKRHDFFKSAXPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIXADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHXVLLEFVTAAGI",
            "total_secondary_structure_sequence":"--HHHHH---SSSSSSSSSSS--SSSSSSSSSSSS----SSSSSSSS--------HHHH----------S------------------SSSSSSSSS----SSSSSSSSSSS--SSSSSSSSSSS------------S------SSSSSSSS----SSSSSSSSSSSS----SSSSSSSSSSSS-----------SSSSSSSSSS--------SSSSSSSSSSS--"}],
        "residue_sequence":"SKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFXVQCFSRYPDHXKRHDFFKSAXPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIXADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHXVLLEFVTAAGI",
        "secondary_structure_sequence":"--HHHHH---SSSSSSSSSSS--SSSSSSSSSSSS----SSSSSSSS--------HHHH----------S------------------SSSSSSSSS----SSSSSSSSSSS--SSSSSSSSSSS------------S------SSSSSSSS----SSSSSSSSSSSS----SSSSSSSSSSSS-----------SSSSSSSSSS--------SSSSSSSSSSS--"},
      "success":true},
    {
      "command_line":"print-atoms [--tags het --adjuncts tf:0:10]",
      "command_name":"print-atoms",
      "data_object":"structure.pdb_2",
      "output":{
        "atoms":[
          {
            "descriptor":{"chainID":"A","resSeq":66,"serial":467,"resName":"CRO","name":"CA1"},
            "ball":{"center":[25.011,26.478,37.078],"radius":1.7},
            "tags":["el=C","het"],
            "adjuncts":{"oc":1,"tf":7.34},
            "id":466},
          {
            "descriptor":{"chainID":"A","resSeq":66,"serial":472,"resName":"CRO","name":"N2"},
            "ball":{"center":[26.975,27.732,38.216],"radius":1.55},
            "tags":["el=N","het"],
            "adjuncts":{"oc":1,"tf":9.21},
            "id":471},
          {
            "descriptor":{"chainID":"A","resSeq":66,"serial":474,"resName":"CRO","name":"C2"},
            "ball":{"center":[26.043,27.875,40.37],"radius":1.7},
            "tags":["el=C","het"],
            "adjuncts":{"oc":1,"tf":5.46},
            "id":473},
          {
            "descriptor":{"chainID":"A","resSeq":66,"serial":481,"resName":"CRO","name":"CG2"},
            "ball":{"center":[29.437,29.37,39.124],"radius":1.7},
            "tags":["el=C","het"],
            "adjuncts":{"oc":1,"tf":7.67},
            "id":480},
          {
            "descriptor":{"chainID":"A","resSeq":66,"serial":486,"resName":"CRO","name":"CZ"},
            "ball":{"center":[31.718,30.3,37.721],"radius":1.7},
            "tags":["el=C","het"],
            "adjuncts":{"oc":1,"tf":9.48},
            "id":485}],
        "atoms_summary":{
          "number_total":5,
          "volume":null}},
      "success":true},
    {
      "command_line":"restrict-atoms [--tags-not het]",
      "command_name":"restrict-atoms",
      "data_object":"structure.pdb_2",
      "output":{
        "atoms_summary_old":{
          "number_total":1771,
          "volume":null},
        "atoms_summary_new":{
          "number_total":1717,
          "volume":null}},
      "success":true},
    {
      "command_line":"print-sequence --secondary-structure",
      "command_name":"print-sequence",
      "data_object":"structure.pdb_2",
      "output":{
        "atoms_summary":{
          "number_total":1717,
          "volume":null},
        "chains":[
          {
            "chain_name":"A",
            "segment_lengths":[63,10,9,64,64,11],
            "residue_sequences":["SKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTF","VQCFSRYPDH","KRHDFFKSA","PEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYI","ADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDH","VLLEFVTAAGI"],
            "secondary_structure_sequences":["--HHHHH---SSSSSSSSSSS--SSSSSSSSSSSS----SSSSSSSS--------HHHH----","-----S----","---------","---SSSSSSSSS----SSSSSSSSSSS--SSSSSSSSSSS------------S------SSSSS","-S----SSSSSSSSSSSS----SSSSSSSSSSSS-----------SSSSSSSS-----------","-SSSSSSSS--"],
            "total_length":221,
            "total_residue_sequence":"SKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFVQCFSRYPDHKRHDFFKSAPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHVLLEFVTAAGI",
            "total_secondary_structure_sequence":"--HHHHH---SSSSSSSSSSS--SSSSSSSSSSSS----SSSSSSSS--------HHHH---------S----------------SSSSSSSSS----SSSSSSSSSSS--SSSSSSSSSSS------------S------SSSSS-S----SSSSSSSSSSSS----SSSSSSSSSSSS-----------SSSSSSSS------------SSSSSSSS--"}],
        "residue_sequence":"SKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFVQCFSRYPDHKRHDFFKSAPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHVLLEFVTAAGI",
        "secondary_structure_sequence":"--HHHHH---SSSSSSSSSSS--SSSSSSSSSSSS----SSSSSSSS--------HHHH---------S----------------SSSSSSSSS----SSSSSSSSSSS--SSSSSSSSSSS------------S------SSSSS-S----SSSSSSSSSSSS----SSSSSSSSSSSS-----------SSSSSSSS------------SSSSSSSS--"},
      "success":true},
    {
      "command_line":"construct-contacts --no-calculate-volumes",
      "command_name":"construct-contacts",
      "data_object":"structure.pdb_2",
      "output":{
        "contacts_summary":{
          "number_total":12469,
          "number_drawable":0,
          "area":47017.2}},
      "success":true},
    {
      "command_line":"construct-contacts",
      "command_name":"construct-contacts",
      "data_object":"structure.pdb_2",
      "output":{
        "contacts_summary":{
          "number_total":12469,
          "number_drawable":0,
          "area":47017.2}},
      "success":true},
    {
      "command_line":"make-drawable-contacts '[--atom1 [r<83>] -min-seq-sep 1]'",
      "command_name":"make-drawable-contacts",
      "data_object":"structure.pdb_2",
      "output":{
        "contacts_summary":{
          "number_total":120,
          "number_drawable":120,
          "area":211.8}},
      "success":true},
    {
      "command_line":"make-drawable-contacts '[--atom1 [r<83>]]'",
      "command_name":"make-drawable-contacts",
      "data_object":"structure.pdb_2",
      "output":{
        "contacts_summary":{
          "number_total":155,
          "number_drawable":155,
          "area":344.904}},
      "success":true},
    {
      "command_line":"make-undrawable-contacts '[-max-seq-sep 0]'",
      "command_name":"make-undrawable-contacts",
      "data_object":"structure.pdb_2",
      "output":{
        "contacts_summary":{
          "number_total":4141,
          "number_drawable":0,
          "area":20568.7}},
      "success":true},
    {
      "command_line":"export-atoms --file './jobs_output/self_scripting/plain_atoms'",
      "command_name":"export-atoms",
      "data_object":"structure.pdb_2",
      "output":{
        "file":"./jobs_output/self_scripting/plain_atoms",
        "atoms_summary":{
          "number_total":1717,
          "volume":41027.8}},
      "success":true},
    {
      "command_line":"export-atoms --file './jobs_output/self_scripting/pdb_atoms' --as-pdb --pdb-b-factor volume",
      "command_name":"export-atoms",
      "data_object":"structure.pdb_2",
      "output":{
        "file":"./jobs_output/self_scripting/pdb_atoms",
        "atoms_summary":{
          "number_total":1717,
          "volume":41027.8}},
      "success":true},
    {
      "command_line":"export-contacts './jobs_output/self_scripting/plain_contacts'",
      "command_name":"export-contacts",
      "data_object":"structure.pdb_2",
      "output":{
        "file":"./jobs_output/self_scripting/plain_contacts",
        "contacts_summary":{
          "number_total":12469,
          "number_drawable":120,
          "area":47017.2}},
      "success":true},
    {
      "command_line":"list-objects",
      "command_name":"list-objects",
      "output":{
        "objects":[
          {
            "name":"structure.cif",
            "picked":false,
            "visible":true},
          {
            "name":"structure.pdb",
            "picked":false,
            "visible":true},
          {
            "name":"structure.pdb_2",
            "picked":true,
            "visible":true}]},
      "success":true},
    {
      "command_line":"delete-objects",
      "command_name":"delete-objects",
      "output":{
        "deleted_objects":["structure.cif","structure.pdb","structure.pdb_2"]},
      "success":true},
    {
      "command_line":"import --file './jobs_output/self_scripting/plain_atoms' --format plain",
      "command_name":"import",
      "output":{
        "atoms_summary":{
          "number_total":1717,
          "volume":41027.8},
        "object_names":["plain_atoms"]},
      "success":true},
    {
      "command_line":"list-objects",
      "command_name":"list-objects",
      "output":{
        "objects":[
          {
            "name":"plain_atoms",
            "picked":true,
            "visible":true}]},
      "success":true},
    {
      "command_line":"select-contacts",
      "command_name":"select-contacts",
      "data_object":"plain_atoms",
      "errors":["No contacts available."],
      "success":false},
    {
      "command_line":"import-contacts --file './jobs_output/self_scripting/plain_contacts'",
      "command_name":"import-contacts",
      "data_object":"plain_atoms",
      "output":{
        "file":"./jobs_output/self_scripting/plain_contacts",
        "contacts_summary":{
          "number_total":12469,
          "number_drawable":120,
          "area":47017.2}},
      "success":true},
    {
      "command_line":"select-contacts [--atom1 [R<PHE>] -atom2 [R<PHE>] -min-area 5.0 --min-seq-sep 1] --name cs1",
      "command_name":"select-contacts",
      "data_object":"plain_atoms",
      "output":{
        "contacts_summary":{
          "number_total":5,
          "number_drawable":1,
          "area":33.8164},
        "selection_name":"cs1"},
      "success":true},
    {
      "command_line":"export-selection-of-contacts [cs1] -file './jobs_output/self_scripting/saved_selection_cs1'",
      "command_name":"export-selection-of-contacts",
      "data_object":"plain_atoms",
      "output":{
        "file":"./jobs_output/self_scripting/saved_selection_cs1",
        "contacts_summary":{
          "number_total":5,
          "number_drawable":1,
          "area":33.8164},
        "number_of_descriptors_written":5},
      "success":true},
    {
      "command_line":"import-selection-of-contacts -file './jobs_output/self_scripting/saved_selection_cs1' -name cs1_copy",
      "command_name":"import-selection-of-contacts",
      "data_object":"plain_atoms",
      "output":{
        "contacts_summary":{
          "number_total":5,
          "number_drawable":1,
          "area":33.8164},
        "selection_name":"cs1_copy"},
      "success":true},
    {
      "command_line":"delete-selections-of-contacts cs1_copy",
      "command_name":"delete-selections-of-contacts",
      "data_object":"plain_atoms",
      "output":{
        "deleted_selections":["cs1_copy"]},
      "success":true},
    {
      "command_line":"set-alias multitag \"set-tag-of-contacts [--min-area ${1}] med; delete-tags-of-contacts [--min-area ${2}] --tags med\"",
      "command_name":"set-alias",
      "output":{
        "alias":"multitag",
        "script":"set-tag-of-contacts [--min-area ${1}] med; delete-tags-of-contacts [--min-area ${2}] --tags med"},
      "success":true},
    {
      "command_line":"set-tag-of-contacts [--min-area 6.0] med",
      "command_name":"set-tag-of-contacts",
      "data_object":"plain_atoms",
      "output":{
        "contacts_summary":{
          "number_total":2636,
          "number_drawable":5,
          "area":29458.6}},
      "success":true},
    {
      "command_line":"delete-tags-of-contacts [--min-area 8.0] --tags med",
      "command_name":"delete-tags-of-contacts",
      "data_object":"plain_atoms",
      "output":{
        "contacts_summary":{
          "number_total":1675,
          "number_drawable":1,
          "area":22795.8}},
      "success":true},
    {
      "command_line":"set-alias pc-cs1 \"print-contacts [cs1]\"",
      "command_name":"set-alias",
      "output":{
        "alias":"pc-cs1",
        "script":"print-contacts [cs1]"},
      "success":true},
    {
      "command_line":"set-alias alt-pc-cs1 \"pc-cs1\"",
      "command_name":"set-alias",
      "output":{
        "alias":"alt-pc-cs1",
        "script":"pc-cs1"},
      "success":true},
    {
      "command_line":"print-contacts [cs1]",
      "command_name":"print-contacts",
      "data_object":"plain_atoms",
      "output":{
        "contacts":[
          {
            "descriptor1":{"chainID":"A","resSeq":8,"serial":49,"resName":"PHE","name":"CD1"},
            "descriptor2":{"chainID":"A","resSeq":71,"serial":518,"resName":"PHE","name":"CE1"},
            "area":5.56317,
            "distance":3.7409,
            "tags":["central","peripherial"],
            "id":436},
          {
            "descriptor1":{"chainID":"A","resSeq":8,"serial":53,"resName":"PHE","name":"CZ"},
            "descriptor2":{"chainID":"A","resSeq":114,"serial":888,"resName":"PHE","name":"CE2"},
            "area":6.42993,
            "distance":3.93888,
            "tags":["central","med","peripherial"],
            "id":481},
          {
            "descriptor1":{"chainID":"A","resSeq":46,"serial":330,"resName":"PHE","name":"CZ"},
            "descriptor2":{"chainID":"A","resSeq":64,"serial":459,"resName":"PHE","name":"CB"},
            "area":6.67924,
            "distance":3.66367,
            "tags":["central","med","peripherial"],
            "id":2740},
          {
            "descriptor1":{"chainID":"A","resSeq":83,"serial":623,"resName":"PHE","name":"C"},
            "descriptor2":{"chainID":"A","resSeq":84,"serial":632,"resName":"PHE","name":"N"},
            "area":6.57156,
            "distance":1.35488,
            "tags":["central","med"],
            "id":4857},
          {
            "descriptor1":{"chainID":"A","resSeq":99,"serial":756,"resName":"PHE","name":"C"},
            "descriptor2":{"chainID":"A","resSeq":100,"serial":765,"resName":"PHE","name":"N"},
            "area":8.5725,
            "distance":1.33208,
            "tags":["central"],
            "id":5962}],
        "contacts_summary":{
          "number_total":5,
          "number_drawable":1,
          "area":33.8164}},
      "success":true},
    {
      "command_line":"print-contacts [cs1] --inter-residue",
      "command_name":"print-contacts",
      "data_object":"plain_atoms",
      "output":{
        "contacts":[
          {
            "descriptor1":{"chainID":"A","resSeq":8,"resName":"PHE"},
            "descriptor2":{"chainID":"A","resSeq":71,"resName":"PHE"},
            "area":5.56317,
            "distance":3.7409,
            "summed":true,
            "tags":["central","peripherial"]},
          {
            "descriptor1":{"chainID":"A","resSeq":8,"resName":"PHE"},
            "descriptor2":{"chainID":"A","resSeq":114,"resName":"PHE"},
            "area":6.42993,
            "distance":3.93888,
            "summed":true,
            "tags":["central","med","peripherial"]},
          {
            "descriptor1":{"chainID":"A","resSeq":46,"resName":"PHE"},
            "descriptor2":{"chainID":"A","resSeq":64,"resName":"PHE"},
            "area":6.67924,
            "distance":3.66367,
            "summed":true,
            "tags":["central","med","peripherial"]},
          {
            "descriptor1":{"chainID":"A","resSeq":83,"resName":"PHE"},
            "descriptor2":{"chainID":"A","resSeq":84,"resName":"PHE"},
            "area":6.57156,
            "distance":1.35488,
            "summed":true,
            "tags":["central","med"]},
          {
            "descriptor1":{"chainID":"A","resSeq":99,"resName":"PHE"},
            "descriptor2":{"chainID":"A","resSeq":100,"resName":"PHE"},
            "area":8.5725,
            "distance":1.33208,
            "summed":true,
            "tags":["central"]}],
        "number_of_inter_residue_contacts":5,
        "contacts_summary":{
          "number_total":5,
          "number_drawable":1,
          "area":33.8164}},
      "success":true},
    {
      "command_line":"select-atoms [r<64> & A<C,N,O,CA,CB>] as1",
      "command_name":"select-atoms",
      "data_object":"plain_atoms",
      "output":{
        "atoms_summary":{
          "number_total":5,
          "volume":108.978},
        "selection_name":"as1"},
      "success":true},
    {
      "command_line":"export-selection-of-atoms [as1] -file './jobs_output/self_scripting/saved_selection_as1'",
      "command_name":"export-selection-of-atoms",
      "data_object":"plain_atoms",
      "output":{
        "file":"./jobs_output/self_scripting/saved_selection_as1",
        "atoms_summary":{
          "number_total":5,
          "volume":108.978},
        "number_of_descriptors_written":5},
      "success":true},
    {
      "command_line":"import-selection-of-atoms -file './jobs_output/self_scripting/saved_selection_as1' -name as1_copy",
      "command_name":"import-selection-of-atoms",
      "data_object":"plain_atoms",
      "output":{
        "atoms_summary":{
          "number_total":5,
          "volume":108.978},
        "selection_name":"as1_copy"},
      "success":true},
    {
      "command_line":"delete-selections-of-atoms as1_copy",
      "command_name":"delete-selections-of-atoms",
      "data_object":"plain_atoms",
      "output":{
        "deleted_selections":["as1_copy"]},
      "success":true},
    {
      "command_line":"set-tag-of-atoms [A<C,N,O,CA,CB>] --tag pept",
      "command_name":"set-tag-of-atoms",
      "data_object":"plain_atoms",
      "output":{
        "atoms_summary":{
          "number_total":1083,
          "volume":20982.5}},
      "success":true},
    {
      "command_line":"delete-tags-of-atoms [A<CA,CB>] --tags pept",
      "command_name":"delete-tags-of-atoms",
      "data_object":"plain_atoms",
      "output":{
        "atoms_summary":{
          "number_total":420,
          "volume":9160.61}},
      "success":true},
    {
      "command_line":"print-atoms [as1]",
      "command_name":"print-atoms",
      "data_object":"plain_atoms",
      "output":{
        "atoms":[
          {
            "descriptor":{"chainID":"A","resSeq":64,"serial":455,"resName":"PHE","name":"N"},
            "ball":{"center":[22.25,29.62,36.583],"radius":1.55},
            "tags":["el=N","pept"],
            "adjuncts":{"oc":1,"tf":10.19,"volume":10.4155},
            "id":454},
          {
            "descriptor":{"chainID":"A","resSeq":64,"serial":456,"resName":"PHE","name":"CA"},
            "ball":{"center":[21.895,28.371,35.995],"radius":1.7},
            "tags":["el=C"],
            "adjuncts":{"oc":1,"tf":8,"volume":13.6959},
            "id":455},
          {
            "descriptor":{"chainID":"A","resSeq":64,"serial":457,"resName":"PHE","name":"C"},
            "ball":{"center":[22.774,27.253,36.518],"radius":1.7},
            "tags":["el=C","pept"],
            "adjuncts":{"oc":1,"tf":25.26,"volume":32.7555},
            "id":456},
          {
            "descriptor":{"chainID":"A","resSeq":64,"serial":458,"resName":"PHE","name":"O"},
            "ball":{"center":[22.313,26.147,36.761],"radius":1.52},
            "tags":["el=O","pept"],
            "adjuncts":{"oc":1,"tf":9.64,"volume":28.8387},
            "id":457},
          {
            "descriptor":{"chainID":"A","resSeq":64,"serial":459,"resName":"PHE","name":"CB"},
            "ball":{"center":[22.114,28.438,34.513],"radius":1.7},
            "tags":["el=C"],
            "adjuncts":{"oc":1,"tf":6.88,"volume":23.2725},
            "id":458}],
        "atoms_summary":{
          "number_total":5,
          "volume":108.978}},
      "success":true},
    {
      "command_line":"print-atoms [r<64> & A<C,N,O,CA,CB>]",
      "command_name":"print-atoms",
      "data_object":"plain_atoms",
      "output":{
        "atoms":[
          {
            "descriptor":{"chainID":"A","resSeq":64,"serial":455,"resName":"PHE","name":"N"},
            "ball":{"center":[22.25,29.62,36.583],"radius":1.55},
            "tags":["el=N","pept"],
            "adjuncts":{"oc":1,"tf":10.19,"volume":10.4155},
            "id":454},
          {
            "descriptor":{"chainID":"A","resSeq":64,"serial":456,"resName":"PHE","name":"CA"},
            "ball":{"center":[21.895,28.371,35.995],"radius":1.7},
            "tags":["el=C"],
            "adjuncts":{"oc":1,"tf":8,"volume":13.6959},
            "id":455},
          {
            "descriptor":{"chainID":"A","resSeq":64,"serial":457,"resName":"PHE","name":"C"},
            "ball":{"center":[22.774,27.253,36.518],"radius":1.7},
            "tags":["el=C","pept"],
            "adjuncts":{"oc":1,"tf":25.26,"volume":32.7555},
            "id":456},
          {
            "descriptor":{"chainID":"A","resSeq":64,"serial":458,"resName":"PHE","name":"O"},
            "ball":{"center":[22.313,26.147,36.761],"radius":1.52},
            "tags":["el=O","pept"],
            "adjuncts":{"oc":1,"tf":9.64,"volume":28.8387},
            "id":457},
          {
            "descriptor":{"chainID":"A","resSeq":64,"serial":459,"resName":"PHE","name":"CB"},
            "ball":{"center":[22.114,28.438,34.513],"radius":1.7},
            "tags":["el=C"],
            "adjuncts":{"oc":1,"tf":6.88,"volume":23.2725},
            "id":458}],
        "atoms_summary":{
          "number_total":5,
          "volume":108.978}},
      "success":true},
    {
      "command_line":"rename-selection-of-atoms nosel1 nodel2",
      "command_name":"rename-selection-of-atoms",
      "data_object":"plain_atoms",
      "errors":["No atoms selection with name 'nosel1'."],
      "success":false},
    {
      "command_line":"delete-selections-of-contacts nosel1",
      "command_name":"delete-selections-of-contacts",
      "data_object":"plain_atoms",
      "errors":["Invalid contacts selection name 'nosel1'."],
      "success":false},
    {
      "command_line":"list-selections-of-atoms",
      "command_name":"list-selections-of-atoms",
      "data_object":"plain_atoms",
      "output":{
        "selections":[
          {
            "name":"as1",
            "atoms_summary":{"number_total":5,"volume":108.978}}]},
      "success":true},
    {
      "command_line":"list-selections-of-contacts",
      "command_name":"list-selections-of-contacts",
      "data_object":"plain_atoms",
      "output":{
        "selections":[
          {
            "name":"_drawable",
            "contacts_summary":{"number_total":120,"number_drawable":120,"area":211.8}},
          {
            "name":"cs1",
            "contacts_summary":{"number_total":5,"number_drawable":1,"area":33.8164}}]},
      "success":true},
    {
      "command_line":"color-atoms 0xFFFF00",
      "command_name":"color-atoms",
      "data_object":"plain_atoms",
      "output":{
        "atoms_summary":{
          "number_total":1717,
          "volume":41027.8}},
      "success":true},
    {
      "command_line":"color-atoms [A<C,CA,N,O>] 0xFF0000",
      "command_name":"color-atoms",
      "data_object":"plain_atoms",
      "output":{
        "atoms_summary":{
          "number_total":884,
          "volume":15442.3}},
      "success":true},
    {
      "command_line":"color-atoms (not [A<C,CA,N,O>]) 0x00FF00",
      "command_name":"color-atoms",
      "data_object":"plain_atoms",
      "output":{
        "atoms_summary":{
          "number_total":833,
          "volume":25585.5}},
      "success":true},
    {
      "command_line":"show-atoms",
      "command_name":"show-atoms",
      "data_object":"plain_atoms",
      "output":{
        "atoms_summary":{
          "number_total":1717,
          "volume":41027.8}},
      "success":true},
    {
      "command_line":"export-atoms-as-pymol-cgo [r<70:90>] -file './jobs_output/self_scripting/cgo_atoms.py' -name atoms",
      "command_name":"export-atoms-as-pymol-cgo",
      "data_object":"plain_atoms",
      "output":{
        "file":"./jobs_output/self_scripting/cgo_atoms.py",
        "atoms_summary":{
          "number_total":167,
          "volume":3864.44}},
      "success":true},
    {
      "command_line":"export-atoms-as-pymol-cgo [r<70:90>] -wireframe -file './jobs_output/self_scripting/cgo_atoms_wf.py' -name atoms_wf",
      "command_name":"export-atoms-as-pymol-cgo",
      "data_object":"plain_atoms",
      "output":{
        "file":"./jobs_output/self_scripting/cgo_atoms_wf.py",
        "atoms_summary":{
          "number_total":167,
          "volume":3864.44}},
      "success":true},
    {
      "command_line":"spectrum-atoms",
      "command_name":"spectrum-atoms",
      "data_object":"plain_atoms",
      "output":{
        "atoms_summary":{
          "number_total":1717,
          "volume":41027.8},
        "spectrum_summary":{
          "min_value":2,
          "max_value":229,
          "number_of_values":1717,
          "mean_of_values":116.207,
          "sd_of_values":65.0001}},
      "success":true},
    {
      "command_line":"export-cartoon-as-pymol-cgo [r<45:60>&A<CA>] -file './jobs_output/self_scripting/cgo_cartoon.py' -name cartoon",
      "command_name":"export-cartoon-as-pymol-cgo",
      "data_object":"plain_atoms",
      "output":{
        "file":"./jobs_output/self_scripting/cgo_cartoon.py",
        "atoms_summary":{
          "number_total":16,
          "volume":262.219}},
      "success":true},
    {
      "command_line":"export-cartoon-as-pymol-cgo [r<45:60>&A<CA>] -wireframe -file './jobs_output/self_scripting/cgo_cartoon_wf.py' -name cartoon_wf",
      "command_name":"export-cartoon-as-pymol-cgo",
      "data_object":"plain_atoms",
      "output":{
        "file":"./jobs_output/self_scripting/cgo_cartoon_wf.py",
        "atoms_summary":{
          "number_total":16,
          "volume":262.219}},
      "success":true},
    {
      "command_line":"color-contacts 0x00FF00",
      "command_name":"color-contacts",
      "data_object":"plain_atoms",
      "output":{
        "contacts_summary":{
          "number_total":12469,
          "number_drawable":120,
          "area":47017.2}},
      "success":true},
    {
      "command_line":"color-contacts [--a1 [A<C,CA,N,O>] --a2 [A<C,CA,N,O>]] 0x00FFFF",
      "command_name":"color-contacts",
      "data_object":"plain_atoms",
      "output":{
        "contacts_summary":{
          "number_total":3546,
          "number_drawable":25,
          "area":12220.3}},
      "success":true},
    {
      "command_line":"color-contacts [-a1 [-m! A<C,CA,N,O>] -a2! [A<C,CA,N,O>]] 0xFFFF00",
      "command_name":"color-contacts",
      "data_object":"plain_atoms",
      "output":{
        "contacts_summary":{
          "number_total":4029,
          "number_drawable":58,
          "area":23058.4}},
      "success":true},
    {
      "command_line":"show-contacts [_drawable]",
      "command_name":"show-contacts",
      "data_object":"plain_atoms",
      "output":{
        "contacts_summary":{
          "number_total":120,
          "number_drawable":120,
          "area":211.8}},
      "success":true},
    {
      "command_line":"export-contacts-as-pymol-cgo [_visible] --file './jobs_output/self_scripting/cgo_contacts.py' --name contacts",
      "command_name":"export-contacts-as-pymol-cgo",
      "data_object":"plain_atoms",
      "output":{
        "file":"./jobs_output/self_scripting/cgo_contacts.py",
        "contacts_summary":{
          "number_total":120,
          "number_drawable":120,
          "area":211.8}},
      "success":true},
    {
      "command_line":"color-contacts 0xFF00FF",
      "command_name":"color-contacts",
      "data_object":"plain_atoms",
      "output":{
        "contacts_summary":{
          "number_total":12469,
          "number_drawable":120,
          "area":47017.2}},
      "success":true},
    {
      "command_line":"export-contacts-as-pymol-cgo [_visible] --wireframe --file './jobs_output/self_scripting/cgo_contacts_wf.py' --name contacts_wf",
      "command_name":"export-contacts-as-pymol-cgo",
      "data_object":"plain_atoms",
      "output":{
        "file":"./jobs_output/self_scripting/cgo_contacts_wf.py",
        "contacts_summary":{
          "number_total":120,
          "number_drawable":120,
          "area":211.8}},
      "success":true},
    {
      "command_line":"export-atoms-and-contacts './jobs_output/self_scripting/plain_atoms_and_contacts'",
      "command_name":"export-atoms-and-contacts",
      "data_object":"plain_atoms",
      "output":{
        "file":"./jobs_output/self_scripting/plain_atoms_and_contacts",
        "atoms_summary":{
          "number_total":1717,
          "volume":41027.8},
        "contacts_summary":{
          "number_total":12469,
          "number_drawable":120,
          "area":47017.2}},
      "success":true},
    {
      "command_line":"import './jobs_output/self_scripting/plain_atoms_and_contacts' -format plain",
      "command_name":"import",
      "output":{
        "atoms_summary":{
          "number_total":1717,
          "volume":41027.8},
        "contacts_summary":{
          "number_total":12469,
          "number_drawable":120,
          "area":47017.2},
        "object_names":["plain_atoms_and_contacts"]},
      "success":true},
    {
      "command_line":"import './jobs_output/self_scripting/plain_atoms' -format plain",
      "command_name":"import",
      "output":{
        "atoms_summary":{
          "number_total":1717,
          "volume":41027.8},
        "object_names":["plain_atoms_2"]},
      "success":true},
    {
      "command_line":"construct-triangulation",
      "command_name":"construct-triangulation",
      "data_object":"plain_atoms_2",
      "output":{
        "triangulation_summary":{
          "number_input_balls":1717,
          "number_all_balls":1725,
          "number_quadruples":11469,
          "number_voronoi_vertices":11470}},
      "success":true},
    {
      "command_line":"export-triangulation '_virtual/plain_triangulation'",
      "command_name":"export-triangulation",
      "data_object":"plain_atoms_2",
      "output":{
        "file":"_virtual/plain_triangulation",
        "full_triangulation_summary":{
          "number_input_balls":1717,
          "number_all_balls":1725,
          "number_quadruples":11469,
          "number_voronoi_vertices":11470},
        "atoms_summary":{
          "number_total":1717,
          "volume":41027.8},
        "number_of_relevant_voronoi_vertices":11122,
        "total_relevant_tetrahedron_volume":35325.6},
      "success":true},
    {
      "command_line":"list-virtual-files",
      "command_name":"list-virtual-files",
      "output":{
        "files":[
          {
            "name":"_virtual/plain_triangulation",
            "bytes":644082}],
        "total_count":1,
        "total_bytes":644082},
      "success":true},
    {
      "command_line":"download-virtual-file -name '_virtual/plain_triangulation' -file './jobs_output/self_scripting/plain_triangulation'",
      "command_name":"download-virtual-file",
      "success":true},
    {
      "command_line":"delete-virtual-files '_virtual/plain_triangulation'",
      "command_name":"delete-virtual-files",
      "success":true},
    {
      "command_line":"list-virtual-files",
      "command_name":"list-virtual-files",
      "output":{
        "total_count":0,
        "total_bytes":0},
      "success":true},
    {
      "command_line":"explain-command color-contacts",
      "command_name":"explain-command",
      "output":{
        "command":"color-contacts",
        "description":"",
        "options":[
          {
            "name":"use",
            "required":false,
            "type":"string",
            "description":"selection expression",
            "default":"[]"},
          {
            "name":"full-residues",
            "required":false,
            "type":"bool",
            "description":"flag to consider full residues",
            "default":"false"},
          {
            "name":"full-chains",
            "required":false,
            "type":"bool",
            "description":"flag to consider full chains",
            "default":"false"},
          {
            "name":"id",
            "required":false,
            "type":"ints",
            "description":"selection identifiers"},
          {
            "name":"rep",
            "required":false,
            "type":"strings",
            "description":"representation names"},
          {
            "name":"next-random-color",
            "required":false,
            "type":"bool",
            "description":"flag to use next random color",
            "default":"false"},
          {
            "name":"col",
            "required":true,
            "type":"string",
            "description":"color"}]},
      "success":true},
    {
      "command_line":"list-commands",
      "command_name":"list-commands",
      "output":{
        "outlines":[
          {
            "name":"add-figure",
            "short_description":""},
          {
            "name":"add-figure-of-2nd-order-cells-for-contacts",
            "short_description":""},
          {
            "name":"add-figure-of-convex-hull",
            "short_description":""},
          {
            "name":"add-figure-of-nth-order-cell",
            "short_description":""},
          {
            "name":"add-figure-of-text",
            "short_description":""},
          {
            "name":"add-figure-of-triangulation",
            "short_description":""},
          {
            "name":"add-figure-of-voxels-test",
            "short_description":""},
          {
            "name":"add-figures-of-labels",
            "short_description":""},
          {
            "name":"add-figures-of-primitive-directions",
            "short_description":""},
          {
            "name":"cad-score",
            "short_description":""},
          {
            "name":"cad-score-many",
            "short_description":""},
          {
            "name":"calculate-akbps",
            "short_description":""},
          {
            "name":"calculate-akbps-layered",
            "short_description":""},
          {
            "name":"calculate-betweenness",
            "short_description":""},
          {
            "name":"calculate-burial-depth",
            "short_description":""},
          {
            "name":"cat-files",
            "short_description":""},
          {
            "name":"center-atoms",
            "short_description":""},
          {
            "name":"check-distance-constraint",
            "short_description":""},
          {
            "name":"clash-score",
            "short_description":""},
          {
            "name":"collect-inter-atom-contact-area-ranges",
            "short_description":""},
          {
            "name":"collect-inter-residue-contact-area-ranges",
            "short_description":""},
          {
            "name":"color-atoms",
            "short_description":""},
          {
            "name":"color-contacts",
            "short_description":""},
          {
            "name":"color-figures",
            "short_description":""},
          {
            "name":"color-figures-of-labels",
            "short_description":""},
          {
            "name":"construct-contacts",
            "short_description":""},
          {
            "name":"construct-triangulation",
            "short_description":""},
          {
            "name":"copy-object",
            "short_description":""},
          {
            "name":"count-common-tessellation-elements",
            "short_description":""},
          {
            "name":"delete-adjuncts-of-atoms",
            "short_description":""},
          {
            "name":"delete-adjuncts-of-contacts",
            "short_description":""},
          {
            "name":"delete-figures",
            "short_description":""},
          {
            "name":"delete-figures-of-labels",
            "short_description":""},
          {
            "name":"delete-global-adjuncts",
            "short_description":""},
          {
            "name":"delete-objects",
            "short_description":""},
          {
            "name":"delete-objects-if",
            "short_description":""},
          {
            "name":"delete-selections-of-atoms",
            "short_description":""},
          {
            "name":"delete-selections-of-contacts",
            "short_description":""},
          {
            "name":"delete-tags-of-atoms",
            "short_description":""},
          {
            "name":"delete-tags-of-contacts",
            "short_description":""},
          {
            "name":"delete-virtual-files",
            "short_description":""},
          {
            "name":"describe-exposure",
            "short_description":""},
          {
            "name":"detect-any-contact-between-structures",
            "short_description":""},
          {
            "name":"distance",
            "short_description":""},
          {
            "name":"download-virtual-file",
            "short_description":""},
          {
            "name":"echo",
            "short_description":""},
          {
            "name":"ensure-exactly-matching-atom-ids-in-objects",
            "short_description":""},
          {
            "name":"estimate-axis",
            "short_description":""},
          {
            "name":"exit",
            "short_description":""},
          {
            "name":"explain-command",
            "short_description":""},
          {
            "name":"export-adjuncts-of-atoms",
            "short_description":""},
          {
            "name":"export-adjuncts-of-atoms-as-casp-qa-line",
            "short_description":""},
          {
            "name":"export-adjuncts-of-contacts",
            "short_description":""},
          {
            "name":"export-atoms",
            "short_description":""},
          {
            "name":"export-atoms-and-contacts",
            "short_description":""},
          {
            "name":"export-atoms-as-pymol-cgo",
            "short_description":""},
          {
            "name":"export-cartoon-as-pymol-cgo",
            "short_description":""},
          {
            "name":"export-contacts",
            "short_description":""},
          {
            "name":"export-contacts-as-connected-mesh",
            "short_description":""},
          {
            "name":"export-contacts-as-pymol-cgo",
            "short_description":""},
          {
            "name":"export-directional-atom-type-tuples",
            "short_description":""},
          {
            "name":"export-figures-as-pymol-cgo",
            "short_description":""},
          {
            "name":"export-global-adjuncts",
            "short_description":""},
          {
            "name":"export-objects",
            "short_description":""},
          {
            "name":"export-selection-of-atoms",
            "short_description":""},
          {
            "name":"export-selection-of-contacts",
            "short_description":""},
          {
            "name":"export-sequence",
            "short_description":""},
          {
            "name":"export-triangulated-convex-hull",
            "short_description":""},
          {
            "name":"export-triangulation",
            "short_description":""},
          {
            "name":"export-triangulation-voxels",
            "short_description":""},
          {
            "name":"find-connected-components",
            "short_description":""},
          {
            "name":"generate-residue-voromqa-energy-profile",
            "short_description":""},
          {
            "name":"hide-atoms",
            "short_description":""},
          {
            "name":"hide-contacts",
            "short_description":""},
          {
            "name":"hide-figures",
            "short_description":""},
          {
            "name":"hide-figures-of-labels",
            "short_description":""},
          {
            "name":"hide-objects",
            "short_description":""},
          {
            "name":"import",
            "short_description":""},
          {
            "name":"import-adjuncts-of-atoms",
            "short_description":""},
          {
            "name":"import-contacts",
            "short_description":""},
          {
            "name":"import-docking-result",
            "short_description":""},
          {
            "name":"import-figure-voxels",
            "short_description":""},
          {
            "name":"import-many",
            "short_description":""},
          {
            "name":"import-objects",
            "short_description":""},
          {
            "name":"import-selection-of-atoms",
            "short_description":""},
          {
            "name":"import-selection-of-contacts",
            "short_description":""},
          {
            "name":"list-commands",
            "short_description":""},
          {
            "name":"list-figures",
            "short_description":""},
          {
            "name":"list-objects",
            "short_description":""},
          {
            "name":"list-selections-of-atoms",
            "short_description":""},
          {
            "name":"list-selections-of-contacts",
            "short_description":""},
          {
            "name":"list-virtual-files",
            "short_description":""},
          {
            "name":"make-drawable-contacts",
            "short_description":""},
          {
            "name":"make-undrawable-contacts",
            "short_description":""},
          {
            "name":"mark-atoms",
            "short_description":""},
          {
            "name":"mark-contacts",
            "short_description":""},
          {
            "name":"merge-objects",
            "short_description":""},
          {
            "name":"mock-voromqa-local-contacts",
            "short_description":""},
          {
            "name":"move-atoms",
            "short_description":""},
          {
            "name":"pick-more-objects",
            "short_description":""},
          {
            "name":"pick-objects",
            "short_description":""},
          {
            "name":"print-atoms",
            "short_description":""},
          {
            "name":"print-contacts",
            "short_description":""},
          {
            "name":"print-figures",
            "short_description":""},
          {
            "name":"print-global-adjuncts",
            "short_description":""},
          {
            "name":"print-sequence",
            "short_description":""},
          {
            "name":"print-time",
            "short_description":""},
          {
            "name":"print-triangulation",
            "short_description":""},
          {
            "name":"print-virtual-file",
            "short_description":""},
          {
            "name":"ranks-jury-score",
            "short_description":""},
          {
            "name":"reduce-table-redundancy-by-bucketing",
            "short_description":""},
          {
            "name":"redundancy-score",
            "short_description":""},
          {
            "name":"rename-global-adjunct",
            "short_description":""},
          {
            "name":"rename-object",
            "short_description":""},
          {
            "name":"rename-selection-of-atoms",
            "short_description":""},
          {
            "name":"rename-selection-of-contacts",
            "short_description":""},
          {
            "name":"reset-time",
            "short_description":""},
          {
            "name":"restrict-atoms",
            "short_description":""},
          {
            "name":"restrict-atoms-and-renumber-residues-by-adjunct",
            "short_description":""},
          {
            "name":"select-atoms",
            "short_description":""},
          {
            "name":"select-atoms-by-triangulation-query",
            "short_description":""},
          {
            "name":"select-atoms-close-to-interchain-interface",
            "short_description":""},
          {
            "name":"select-contacts",
            "short_description":""},
          {
            "name":"set-adjunct-of-atoms",
            "short_description":""},
          {
            "name":"set-adjunct-of-atoms-by-contact-adjuncts",
            "short_description":""},
          {
            "name":"set-adjunct-of-atoms-by-contact-areas",
            "short_description":""},
          {
            "name":"set-adjunct-of-atoms-by-expression",
            "short_description":""},
          {
            "name":"set-adjunct-of-atoms-by-projection",
            "short_description":""},
          {
            "name":"set-adjunct-of-atoms-by-residue-pooling",
            "short_description":""},
          {
            "name":"set-adjunct-of-atoms-by-sequence-alignment",
            "short_description":""},
          {
            "name":"set-adjunct-of-atoms-by-type-number",
            "short_description":""},
          {
            "name":"set-adjunct-of-contacts",
            "short_description":""},
          {
            "name":"set-adjunct-of-contacts-by-atom-adjuncts",
            "short_description":""},
          {
            "name":"set-adjunct-of-contacts-by-expression",
            "short_description":""},
          {
            "name":"set-adjuncts-of-atoms-by-ufsr",
            "short_description":""},
          {
            "name":"set-adjuncts-of-contacts-by-ufsr",
            "short_description":""},
          {
            "name":"set-alias",
            "short_description":""},
          {
            "name":"set-atom-names",
            "short_description":""},
          {
            "name":"set-atom-serials",
            "short_description":""},
          {
            "name":"set-chain-name",
            "short_description":""},
          {
            "name":"set-chain-names-and-residue-numbers-by-sequences",
            "short_description":""},
          {
            "name":"set-chain-names-by-guessing",
            "short_description":""},
          {
            "name":"set-chain-residue-numbers-by-sequence",
            "short_description":""},
          {
            "name":"set-global-adjunct",
            "short_description":""},
          {
            "name":"set-global-adjunct-by-pooling",
            "short_description":""},
          {
            "name":"set-residue-numbers-sequentially",
            "short_description":""},
          {
            "name":"set-tag-of-atoms",
            "short_description":""},
          {
            "name":"set-tag-of-atoms-by-secondary-structure",
            "short_description":""},
          {
            "name":"set-tag-of-contacts",
            "short_description":""},
          {
            "name":"setup-akbps",
            "short_description":""},
          {
            "name":"setup-akbps-layered",
            "short_description":""},
          {
            "name":"setup-chemistry-annotating",
            "short_description":""},
          {
            "name":"setup-loading",
            "short_description":""},
          {
            "name":"setup-mock-voromqa",
            "short_description":""},
          {
            "name":"setup-parallelization",
            "short_description":""},
          {
            "name":"setup-random-seed",
            "short_description":""},
          {
            "name":"setup-voromqa",
            "short_description":""},
          {
            "name":"show-atoms",
            "short_description":""},
          {
            "name":"show-contacts",
            "short_description":""},
          {
            "name":"show-figures",
            "short_description":""},
          {
            "name":"show-figures-of-labels",
            "short_description":""},
          {
            "name":"show-next-picked-object",
            "short_description":""},
          {
            "name":"show-objects",
            "short_description":""},
          {
            "name":"smooth-adjacent-contact-adjunct-values",
            "short_description":""},
          {
            "name":"sort-atoms-by-residue-id",
            "short_description":""},
          {
            "name":"source",
            "short_description":""},
          {
            "name":"spectrum-atoms",
            "short_description":""},
          {
            "name":"spectrum-contacts",
            "short_description":""},
          {
            "name":"split-blocks-file",
            "short_description":""},
          {
            "name":"split-pdb-file",
            "short_description":""},
          {
            "name":"summarize-linear-structure",
            "short_description":""},
          {
            "name":"tournament-sort",
            "short_description":""},
          {
            "name":"unmark-atoms",
            "short_description":""},
          {
            "name":"unmark-contacts",
            "short_description":""},
          {
            "name":"unpick-objects",
            "short_description":""},
          {
            "name":"unset-aliases",
            "short_description":""},
          {
            "name":"upload-virtual-file",
            "short_description":""},
          {
            "name":"vcblocks",
            "short_description":""},
          {
            "name":"voromqa-frustration",
            "short_description":""},
          {
            "name":"voromqa-global",
            "short_description":""},
          {
            "name":"voromqa-interface-frustration",
            "short_description":""},
          {
            "name":"voromqa-local",
            "short_description":""},
          {
            "name":"voromqa-membrane-place",
            "short_description":""},
          {
            "name":"zoom-by-atoms",
            "short_description":""},
          {
            "name":"zoom-by-contacts",
            "short_description":""},
          {
            "name":"zoom-by-objects",
            "short_description":""}]},
      "success":true},
    {
      "command_line":"list-objects",
      "command_name":"list-objects",
      "output":{
        "objects":[
          {
            "name":"plain_atoms",
            "picked":false,
            "visible":true},
          {
            "name":"plain_atoms_and_contacts",
            "picked":false,
            "visible":true},
          {
            "name":"plain_atoms_2",
            "picked":true,
            "visible":true}]},
      "success":true},
    {
      "command_line":"delete-objects -names plain_atoms",
      "command_name":"delete-objects",
      "output":{
        "deleted_objects":["plain_atoms"]},
      "success":true},
    {
      "command_line":"list-objects",
      "command_name":"list-objects",
      "output":{
        "objects":[
          {
            "name":"plain_atoms_and_contacts",
            "picked":false,
            "visible":true},
          {
            "name":"plain_atoms_2",
            "picked":true,
            "visible":true}]},
      "success":true},
    {
      "command_line":"set-alias quit exit",
      "command_name":"set-alias",
      "output":{
        "alias":"quit",
        "script":"exit"},
      "success":true},
    {
      "command_line":"exit",
      "command_name":"exit",
      "success":true}],
  "results_summary":{
    "count_all":78,
    "count_successful":75,
    "full_success":false,
    "partial_success":true}}
